Yes, but if you set it to "add as a new document and automatically rename", after all documents are saved, you can find anything with the (2) or (n) in that folder that were just added and delete them. Still faster than answering the prompt or stopping the process.

Is it weird that I hear your voice in my head as I read your replies, lol. The option is only for renaming documents though. In my specific case I am needing to merge folders. I added documents in the request because I figured it would apply to both situations. What is really needed is a merge option, but there is already a request for that feature. In the meantime I am creating a workflow.